BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB006B10SP1|AL425486
(825 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1140 1477 0.0
>3x_Contig1140
Length = 5352
Score = 1477 bits (729), Expect = 0.0
Identities = 777/809 (96%), Gaps = 1/809 (0%)
Strand = Plus / Plus
Query: 1 gatcgcgttgacaccaaaataattcccaacattgacaataaaatcaagattggmattctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4535 gatcgcgttgacaccaaaataattcccaacattgacaataaaatcaagattggaattctt 4594
Query: 61 ttatcataatgaatgcyatgaacgamaaacggtgccgatagtttaattaamaaggaaggc 120
|||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 4595 ttatcataatgaatgctatgaacgaaaaacggtgccgatagtttaattaaaaaggaaggc 4654
Query: 121 attatatcaaacaataacacaattgatttcgggaggctgggcccaatgatatctgaagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4655 attatatcaaacaataacacaattgatttcgggaggctgggcccaatgatatctgaagcc 4714
Query: 181 gctgataaaataaccacatataatatattattgataagtccgaacaaccagaaatatgcm 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4715 gctgataaaataaccacatataatatattattgataagtccgaacaaccagaaatatgca 4774
Query: 241 aatgttttcttgtctctatccaattccattgaatgttaatagacgtgactcaaccgaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4775 aatgttttcttgtctctatccaattccattgaatgttaatagacgtgactcaaccgaaaa 4834
Query: 301 mmctatgaatcaatacactaaamacttcattcaagagtacggaatctgctcttactttga 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4835 aactatgaatcaatacactaaaaacttcattcaagagtacggaatctgctcttactttga 4894
Query: 361 aaactcactagattatccagtactcttcaactaaaggcmatacatccttccccttacata 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4895 aaactcactagattatccagtactcttcaactaaaggcaatacatccttccccttacata 4954
Query: 421 ccctaaatmttgtctacacatgcmtgtctcgaaaatgaaagctgtaaacttatttttttt 480
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4955 ccctaaatattgtctacacatgcatgtctcgaaaatgaaagctgtaaacttatttttttt 5014
Query: 481 ttmattctctggccccgtaatwatttgamggttcaacaaaacatttttttgtttgttact 540
|| |||||||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 5015 ttaattctctggccccgtaataatttgaaggatcaacaaaacatttttttgtttgttaca 5074
Query: 541 aacagttctacaatgaactaactttacttgtctacmacaatwwcaacaacwwcwaatwaa 600
||||| |||||||||||||||||||||||||| || ||||| ||||||| | ||| ||
Sbjct: 5075 aacagatctacaatgaactaactttacttgtcaacaacaataacaacaacaacaaataaa 5134
Query: 601 cattagtttccaaacaagacaagtatcaggctcctctgatcgtcccaagatcggttagtt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5135 cattagtttccaaacaagacaagtatcaggctcctctgatcgtcccaagatcggttagtt 5194
Query: 661 tgtgattttatmgcmaaaataaamtgttcacactgtttcgcatawtttccwcttgggttg 720
||||||||||| || |||||||| |||||||||||||||||||| ||||| ||||||| |
Sbjct: 5195 tgtgattttatcgccaaaataaactgttcacactgtttcgcataatttccacttgggtag 5254
Query: 721 caatgagtaaacacatcgaaatgccagatatcgacattggagaatggattgattctgtat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5255 caatgagtaaacacatcgaaatgccagatatcgacattggagaatggattgattctgtat 5314
Query: 781 ctttc-aagaaaaacggttacgagattgc 808
||||| |||||||||||||||||||||||
Sbjct: 5315 ctttctaagaaaaacggttacgagattgc 5343
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6238
Number of Sequences: 1807
Number of extensions: 6238
Number of successful extensions: 152
Number of sequences better than 1.0e-20: 1
length of query: 825
length of database: 10,358,551
effective HSP length: 16
effective length of query: 809
effective length of database: 10,329,639
effective search space: 8356677951
effective search space used: 8356677951
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.4 bits)
S1: 12 (24.8 bits)
S2: 49 (99.8 bits)